PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3161_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family M-type_MADS
Protein Properties Length: 61aa    MW: 7055.21 Da    PI: 10.4603
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3161_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF104.53.6e-33959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Neem_3161_f_3  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
                   79***********************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.118161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-31260IPR002100Transcription factor, MADS-box
CDDcd002657.02E-39260No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-34323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-342338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-343859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNS  60
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-22160160Myocyte-specific enhancer factor 2B
1tqe_Q3e-22160160Myocyte-specific enhancer factor 2B
1tqe_R3e-22160160Myocyte-specific enhancer factor 2B
1tqe_S3e-22160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1132367e-65HQ113236.1 Siraitia grosvenorii mads-box transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146364.11e-36hypothetical protein PHAVU_006G034400g
SwissprotQ407041e-37MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A151RFR14e-37A0A151RFR1_CAJCA; MADS-box transcription factor 3
TrEMBLQ2IA031e-36Q2IA03_DENCR; AGAMOUS-like transcription factor
STRINGPOPTR_0011s03150.11e-35(Populus trichocarpa)
STRINGBGIOSGA002178-PA1e-35(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.14e-38MIKC_MADS family protein